Well I managed to get it to run but it still isn't running the actual mod, the commands it promises are not recognised.
am using the following command line,
"C:\Program Files\LucasArts\Star Wars Jedi Knight Jedi Academy\GameData\jampDed.exe" +exec server.cfg +fs_game omni
Name: Coraith Bowca
Currant Location: Tatooine
Profession: Hired Muscle (Brawler)