Logan sighed. "All right, but I'm gonna be there."
Donnie put down the phone, and walked to the door. He was holding a box full of envelopes. He immediately put them out next to the dumpster. Tomorrow was going to be the day.
He also beeped Mike simply with the word "Tomorrow"
Vader's wife was very pregnant when she died 19 years ago. All of a sudden a 19 year old who is very strong in the force and has a distinct resembalance to him in his younger days rolls in from Vader's home planet with his old Master Obi-Wan (Who was the ONLY other person preset at the time his wife died. And to boot, the kid's last name is Skywalker.
So in answer to your question, he knew Luke was his son because his name is Darth Vader, and not Darth Retard.
-Forum post on why Vader knew Luke was his son.