Okay, so I figured I'd first just try to recompile one of the standard maps with no changes just to make sure everything worked. I converted t1_sour.bsp to a map using q3map2, then tried to recompile I'm getting leaks and such. Is there something special I need to do to recompile the standard maps? I can compile my own maps with no trouble, by the way.
I compile with: -meta -vis -light -filter -super 2 -bounce 8