This vid pretty much answers my questions.
But after this scene, the Exile goes into the Ebon Hawk, where Atton says that the Handmaiden has taken Kreia to Atris. The Exile then answers, "Then we will have to go to there - the Sith will attack Telos"
1. How did the Handmaiden take Kreia to Atris without a flaming ship?
2. Who told the Exile that the Sith were about to attack Telos?