JR: Here ya go :)
1) Create an "academy folder" inside the gamedata folder with everything in it, except for the JediAcademy.bat file.
2) Open academy.cfg file and adjust it to your liking. (passwords, motd, cvars, etc.) and save it.
3) Then Place the JediAcademy.bat file inside the gamedata folder and double click it to run the game. (This loads the mod immediatly without having the hassle of going through the GUI)
4) When you start server, open console and type
It was done this way for that reason as well as if you created a pk3 file, chances are client would still have to download it. So eliminating the pk3 would make the mod truly serverside.