Nope, not unless you somehow hack the MotS install program off the CD (something I don't know how to do), it will always ask for a copy of JK CD #2 the first time you run it.
You could I suppose burn a copy of the JK CD #2 for your own use everytime you install it, but it would simply be easier to just buy JK (hey, I saw it for $10 at Hastings, and that was a few months back). It's a great game, and even if you never play it, the cutscenes are pretty fun to watch. Or you can order it directly from LucasArt's website...
Kurgan
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