Like that weird zoom in on the transports right before they blew up... what was that?
Lucas was obviously trying to get a hand-held camera feeling, a documentary effect to make the battle seem more realistic. They're common tricks in war movies, but this time it was done with a completely CG environment.
I would've liked to see a pulled back, one-cut version of the Anakin/Dooku battle, but I really liked the strobe effect, too--it gave it a certain feeling. And, if you think about it, that battle will be something uniquly Star Wars, as people don't generally fight eachother with neon tubes